Mapping settings
Mapping settings tell TruSync how to translate your store’s data into QuickBooks terms. There are three kinds.
Customer mapping
TruSync maps every order from a store to a single QuickBooks customer, chosen when you set up the store — it doesn’t create a separate QuickBooks customer per shopper.
Payment method mapping
Each payment method your store offers needs two things: a matching QuickBooks payment method, and a deposit account for the money to land in. Orders using an unmapped payment method become an order exception rather than posting with a guessed mapping — TruSync never auto-maps a payment method to a default.
When you first open Settings → Payments, TruSync pre-selects the choices it thinks are right and shows them as suggestions. Nothing is saved until you review them and click Save these mappings. Until you do, orders using those payment methods wait in Order Exceptions.
This step only applies to stores where payment methods matter; marketplace stores like Amazon and eBay skip it, since Invoices don’t carry a payment method.
Which account a payment method deposits to
The deposit account on each mapping decides which QuickBooks account that payment method’s money lands in. Choosing the wrong one doesn’t stop orders syncing, which is what makes it easy to miss — it puts the money in the wrong register, and that usually surfaces weeks later when a bank reconciliation won’t balance.
What matters is where the money actually arrives, not what the payment method is called.
Card payments — credit and debit cards, and card-backed wallets like Google Pay and Apple Pay — deposit to Undeposited Funds. Your processor pays these out to your bank later, in a batch covering many orders, so each receipt waits in Undeposited Funds until the matching Bank Deposit posts against it.
PayPal-branded payments — PayPal, PayPal Pay Later, PayPal Credit, Venmo, and card payments taken through PayPal checkout — deposit to your PayPal account, because that money lands in your PayPal balance rather than arriving as a bank payout.
A gateway’s name doesn’t tell you which of the two a payment method is. Braintree handles both card payments and PayPal payments, and it names its own QuickBooks payment method “Braintree (PayPal)” even for card charges. If you aren’t sure which flow a payment method belongs to, check where that money actually arrives before choosing.
Tax jurisdiction mapping
Sales tax works differently than the other two: TruSync controls the tax amount on each order (using your store’s own tax calculation), but the destination account the tax lands in is determined by which QuickBooks tax rate you map a jurisdiction to. Each QuickBooks tax rate is tied to a tax agency, and that agency owns the liability account — TruSync doesn’t set a liability account directly. Mapping a jurisdiction to the right tax rate is what routes the money correctly.
This step only appears for stores where you handle sales tax yourself. Marketplace stores skip it, since the marketplace already collects and remits tax as a facilitator.
FAQ
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Can I map more than one payment method to the same QuickBooks payment method?
Which deposit account should I choose?
What happens if I pick the wrong deposit account?
What happens if I don’t map a tax jurisdiction?
Should I turn on QuickBooks’ automated sales tax calculation?

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